Michael S. Waterman

University Professor at USC

Reports and Conference Proceedings

1	Zhang, K., Sun, F., Waterman, M.S. and Chen, T. . "Dynamic programming algorithms for partitioning sequence variation in human chromosomes," Computer Mathematics and Its Applications; Advances and Developments (1994-2005) E.A. Lipitakis, Editor, LEA Publishers (2006), p. 431-442.
2	Waterman, M.S. (2006) Stan Ulam and Computational Biology. Proceedings Tenth Annual Conference on Computational Molecular Biology (RECOMB 2006) A. Apostolico et al, Editors. Lecture Notes in Bioinformatics (LNBI 3909), Springer (2006). p. 159.
3	Zhang, K.Chen, T., Waterman, M.S. , Qin, Z., Liu, J., and Sun, F.(2004) Computational Methods for SNPs and Haplotype Inference. S. Istrail et al, Editors, Lecture Notes in Computer Science, Springer (2004) p. 96-112.
4	Zhang K., Chen, T., Waterman MS, Sun, F., (2004) A set of dynamic algorithms for haplotype block partition and tag SNP selection via haplotype data and genotype data. Computational Methods for SNPs and Haplotype Inference, Istrail, S.,Waterman, M.S. , and Clark A., Editors, LNBI 2983, Springer, 96-112.
5	Waterman, M.S. . "Dynamic programming algorithms for partitioning sequence variation in human chromosomes," Proceedings of the 7-th Joint Conference on Information Sciences, 2003 JCIS/Association for Intelligent Machinery, Inc. ISBN No. 0-970789-2- 5. p. 53.
6	Waterman, M.S. and Zhang, Yu. Eulerian Methods for Multiple Sequence Alignment Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003 IEEE Computer Society, Order Number PR02000, 11-14 August) 29.
7	Zhang, K., Sun, F., Waterman, M.S. , and Chen, T. Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data Proceedings Seventh Annual Conference on Computational Molecular Biology (RECOMB 2003) T. Lengauer, W. Miller, S. Istrail, P. Pevzner and M.S. Waterman, Editors. ACM Press, Order Number 508031, (April 10-13, 2003), 332-340
8	Li, L., Kim, J., and Waterman, M.S. Haplotype reconstruction from SNP alignment Proceedings Seventh Annual Conference on Computational Molecular Biology (RECOMB 2003)T. Lengauer, W. Miller, S. Istrail, P. Pevzner and M.S. Waterman, Editors. ACM Press, Order Number 508031, (April 10-13, 2003), 207-216
9	Waterman, M.S. Eric Lander to Give von Neumann Lecture in Philadelphia. SIAM News, 35, June 2002, 1;13.
10	Tang, M,Waterman, M.S. , and Yooseph, sS. Zinc finger gene clusters and tandem gene duplication. (2001) Proceedings Fifth Annual Conference on Computational Molecular Biology (RECOMB97) ACM Press, Order Number 508011, (April 22-25, 2001), 297- 304.
11	Pevzner, P., Tang, H. , and Waterman, M.S. A new approach to fragment assembly in DNA sequencing. (2001) Proceedings Fifth Annual Conference on Computational Molecular Biology (RECOMB97) ACM Press, Order Number 508011, (April 22-25, 2001), 256-267.
12	Daneik, V. and Waterman, M.S. Simple maximum likelihood methods for the optical mapping problem (1998) Genome Informatics No. 8 Universal Academy Press, Inc. (ISSN 0919-9454), pp 1-8.
13	Komatsoulis, G.A. and Waterman, M.S. (1997) Statistics in Molecular Biology: An Example from Detection of Chimeric i6S RNA Artifacts Computing Science and Statistics, 29(3), 210-217.
14	Sun, F., Benson, G., Arnheim, A., and Waterman, M.S. Pooling strategies for establishing genome maps using FISH. (1997) Proceedings First Annual Conference on Computational Molecular Biology (RECOMB97) ACM Press, Order Number 508971, (January 19 - 22, 1997) 294-299.
15	Waterman, M.S. and Vingron, M. Statistical and computational aspects of biological database searches. (1997) Proceedings of the International Symposium on Theoretical Biophysics and Biomathematics Inner Mongolia University Press, pp. 1-6.
16	Komatsoulis, G.A. and Waterman, M.S. Chimeric alignment by dynamic programming: algorithm and biological uses (1997) Proceedings First Annual Conference on Computational Molecular Biology (RECOMB97) ACM Press, Order Number 508971, (January 19 - 22, 1997) 174-180.
17	Vingron, M. and Waterman, M.S. Statistical significance of local alignments with gaps. Bioinformatics: From Nucleic Acids and proteins to Cell Metabolism. GBF Monographs Vol. 18., Schomburg, D., and Lessel, U., Eds. (1995) 75-84.
18	Pevzner, P.A. and Waterman, M.S. Open combinatorial problems in computational biology (1995) Invited Paper Proceedings Third Israel Symposium on the Theory of Computing and Systems IEEE Computer Society Press, Order Number PR6915, (January 4-6, 1995) 158-173.
19	Branscomb, E., Cartwright, P., Cinkosky, M.J., Davison, D., Fasman, K.H., Fields, C., Gilna, P., Kingsbury, D.T., Marr, T. Slezak, T., Smith, F.R., Spengler, S., Uberbacher, E., and Waterman, M. (1993) DOE informaties summit meeting report. April 26-27, 1993. Baltimore, MD. (Available via Gopher at gopher.gdb.org, and via the World Wide Web at http://www.gdb.org/hopkins.html ).
20	Churchill, G., Burks, B., Eggert, E., Engle, M.L., Waterman, M.S. Assembling DNA sequence fragments by shuffling and simulated annealing Los Alamos Scientific Laboratory Publication, LA-UR-2287. (1993) 25 pages.
21	Mathematical bioinformaties (T. Lengauer, D. Schomburg, M. Waterman (editors)) Dagstuhl-Seminar-Report; 46 07.09.-11.09.92 (9237) (1992).
22	Chow, E.T., Hunkapillar, T., Peterson, J.C. and Waterman, M.S. Biological information signal processor Proceedings of the IEEE Applications-Specific Array Processors Conference, IEEE Computer Society Press, Order Number 2237, (September 1991) 144-160.
23	Chow, E.T., Hunkapillar, T., Peterson, J.C., Zimmerman, B.A. and Waterman, M.S. A systolic array processor for biological information signal processing Proceedings of the 1991 International Conference on Supercomputing (ICS-91), ACM Order Number 415911, (June 17-21, 1991) 216-223.
24	Goldstein, L. and Waterman, M.S. (1988) A simulated annealing approach to mapping DNA. Computing Science and Statistics. Proceedings of the 20th Symposium on the Interface: Computationally Intense Methods in Statistics. Eds. Wegman, Gantz, and Miller) 147-151.
25	Waterman, M.S. (1988) Mathematical results for mapping DNA. Texas Tech University, Mathematics Series. Visiting Scholars Lectures, 1986-1987 Volume 15, 137-147.
26	Waterman, M.S. (1988) Pattern matching in DNA sequences. Volume 4, Proceedings 1988 IMACS, 4-6.
27	Howell, J.A.2 Smith, T.F. and Waterman, M.S. Using MACSYMA to compute generating functions for RNA. Proceedings 1979 MACSYMA Users Conference, 126-139.
28	Smith, T.F. and Waterman, M.S. (1978) Evolutionary distance and secondary structure for biornolecules. Los Alamos Scientific Laboratory Publication, LA-7153-MS. 21 pages.
29	Johnson, M.E., Monash, E.A. and Waterman, M.S. (1978) Modeling and optimizing a gas-water reservoir. Los Alamos Scientific Laboratory Publication, LA-7088. 27 pages.
30	Beyer, W.A. and Waterman, M.S. (1978) A conditioned random walk with applications. Los Alamos Scientific Laboratory Publication LA-6990-MS. 18 pages.
31	Martz, H.F. and Waterman, M.S. (1977) Statistical analysis and planning of multihundred-watt impact tests. Los Alamos Scientific Laboratory Publication LA-6886- MS. 13 pages.
32	WOer, R.A., Johnson, M.M., Martz, H.F. and Waterman, M.S. (1977) Gamma prior distribution selection for Bayesian analysis of failure rate and reliability in Nuclear Systems Reliability Engineering and Risk Assessment (SIAM) edited by J. B. Fussell and G. R. Burdick.
33	Zeigler, R.K., Bement, T.R., Whiteman, D. and Waterman, M.S. (1977) Some problems associated with the analysis of National Uranium Resource Evaluation (NURE) data Proceedings of the Second ERDA Statistical Symposium, LA-6758-C, 212-238.
34	Martz, H.F., Waller, R.A. and Waterman, M.S. (July 1976) Fitting beta prior distributions in Bayesian reliability analysis. Los Alamos Scientific Laboratory Publication LA-6395-MS. 23 pages.
35	Johnson, R.W. and Waterman, M.S. (Jan. 1976) Jacobi Algorithms for Integers. Los Alamos Scientific Laboratory Publication LA-6187-MS. 15 pages.
36	Waterman, M.S. (1975) Introduction to Statistics (32 pages). A correspondence study course written for and published by Correspondence Study Office, University of Idaho Campus, Moscow, ID 83843.
37	Waterman, M.S. (January 1974) A Statistical Evaluation of the Marviken Data. Work performed for the U. S. A. E. C. by Energy Incorporated . 144 pages.
38	Waterman, M.S. Decimals and partial quotients of Euler's constant and LN(2). Accepted by UMT of the AMS.
39	Waterman, M.S. 1972 Allocating defense missiles to maximize expected distance between the target and closest penetrating offensive missile. Bell Telephone Laboratories Technical Memorandum 66-4263-12, 1966. This work appears in Mathematical Models of Target Coverage and Missile Allocation by A. R. Eckler and S. A. Burr, Militaxy Operations Research Society.